Read a fastq file

Read a fastq file and encode Phred quality score from 0 to 93 using ASCII 33 to 126. (Reads need to be the same length)

read_fastq(datafile = NULL)

Arguments

datafile	Path to a fastq file.

Value

Return a list contains reads, quality socres and dim of the data.

Examples

# Read a fastq file
datFile <- system.file("extdata", "sim.fastq", package = "CClust")
dat <- read_fastq(datafile = datFile)
#> Minimum quality score: ( (40)
#> Maximum quality score: G (71)
#> Minimum read length: 251
#> Maximum read length: 251
# Read a fasta file
datFile <- system.file("extdata", "sim.fasta", package = "CClust")
dat <- read_fasta(datafile = datFile)
#> Minimum read length: 240
#> Maximum read length: 240